12–17 Jul 2026
University of Graz
Europe/Vienna timezone

On the abelian structure of noncompetitive chemical reaction networks.

MS154-03
15 Jul 2026, 11:50
20m
11.01 - HS (University of Graz)

11.01 - HS

University of Graz

130
Minisymposium Talk Systems Biology and Biochemical Networks Advanced Topics in Stochastic Chemical Reaction Networks

Speaker

Louis Faul (Université de Fribourg)

Description

Chemical reaction networks (CRNs) are foundational models for describing complex biochemical processes. We study noncompetitive CRNs, a class of networks whose static states are rate-independent, and that can implement ReLU neural networks. A central contribution of this work is that noncompetitive CRNs are special instances of Abelian networks (ANs)—a well-established framework for self-organized criticality. CRNs of interest in biochemistry and systems biology are embedded in complex networks so that local CRNs have to respond to internal and environmental cues. We describe the network’s response to such perturbations using a Markov chain whose state space is the set of CRN’s static states, from where no reaction is possible. The addition of molecules to a static state induces reactions that move the system into a new static state. For noncompetitive CRNs of finite state space, we use AN theory to get that only a fraction of the static states are recurrent, suggesting that these states might be the biologically relevant configurations.

We obtain furthermore that the set of recurrent states is in one to one correspondence with the critical group of the AN. Overall, this work establishes a unified algebraic and probabilistic framework for analyzing the long-term behavior of noncompetitive CRNs.

Bibliography

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title={The abelian sandpile; a mathematical introduction},
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journal={Markov Processes and Relat. Fields},
volume={7},
pages={509--523},
year={2001}
}

@article{doty2024computational,
title={The computational power of discrete chemical reaction networks with bounded executions},
author={Doty, D. and Heckmann, B.},
journal={arXiv preprint arXiv:2405.08649},
year={2024}
}

@article{bond2016abelian3,
title={Abelian networks III: The critical group},
author={Bond, B. and Levine, L.},
journal={Journal of Algebraic Combinatorics},
volume={43},
pages={635--663},
year={2016},
publisher={Springer}
}

@article{Vasic,
      Author = {Vasic, M. and Chalk, C. and Luchsinger, A. and Khurshild, S. and Soloveichik, D.},
      Journal = {PNAS},
      Pages = {e2111552119},
      Title = {Programming and training rate-independent chemical reaction networks},
      Volume = {24},
      Year = {2022}
}

Author

Louis Faul (Université de Fribourg)

Co-authors

Christian Mazza (University of Fribourg) Marie Bétrisey (University of Fribourg) Xavier Richard (University of Applied Sciences of Western Switzerland)

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